miRBase entry: cas-MIR165b

Stem-loop cas-MIR165b


Accession
MI0037186
Description
Camelina sativa cas-MIR165b precursor miRNA

Literature search
1 open access papers mention cas-MIR165b
(2 sentences)

Sequence

gggGAAUGUUGUUUGGAUCGAGGauaucauaucacaccauacacaaguuuauauccugauauuacgauaugcaugauacgauuguguaauaauguacauauauaugguaucgucggaccaggcuucauucccc
((((((((..((((((.((((.((((((((((.(((...(((((((.....((((.((((((....)))).)).))))...)))))))....)))......)))))))))).)))).))))))..))))))))

Structure
        UU      A    G          -----c   -cca       guuua    c  -    u 
gggGAAUG  GUUUGG UCGA Gauaucauau      aca    uacacaa     uauc ug auau a
||||||||  |||||| |||| ||||||||||      |||    |||||||     |||| || ||||  
ccccuuac  cggacc ggcu cuaugguaua      ugu    auguguu     auag ac uaua c
        uu      a    g          uauaca   aaua       --agc    u  g    g 


Annotation confidence Not enough data
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Genome context
chr2: 834589-834721 [+]

Database links

Mature cas-miR165b

Accession MIMAT0045297
Description Camelina sativa cas-miR165b mature miRNA
Sequence 4 - GAAUGUUGUUUGGAUCGAGG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25826400
    Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
    Poudel S, Aryal N, Lu C
    PLoS One (2015) 10:e0121542