miRBase entry: cas-MIR166e

Stem-loop cas-MIR166e


Accession
MI0037191
Description
Camelina sativa cas-MIR166e precursor miRNA

Literature search
1 open access papers mention cas-MIR166e
(4 sentences)

Sequence

ugagggggauguugucuggcucgaggacucuagcucgcucuauucauguuuugggucuuuuucgaucuaauauuugaaccuccagauuuucagaucugauuuaggguuuuagcgucgUCGGACCAGGCUUCAUUCCCUcca
((.((((((((..((((((.((((.(((.((((...((((((((((.((.(((((((......))))))).)).))))....((((((....))))))...)))))).)))).))).)))).))))))..)))))))).))

Structure
  a        uu      c    g   u    cuc      -----------------------    u  u       uu 
ug gggggaug  gucugg ucga gac cuag   gcucua                       uuca gu uuggguc  u
|| ||||||||  |||||| |||| ||| ||||   ||||||                       |||| || |||||||   
ac UCCCUUAC  CGGACC GGCU cug gauu   ugggau                       aagu ua aaucuag  u
  c        UU      A    g   c    --u      uuagucuagacuuuuagaccucc    u  u       cu 


Annotation confidence Not enough data
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Genome context
chr6: 25720187-25720327 [+]

Database links

Mature cas-miR166e

Accession MIMAT0045303
Description Camelina sativa cas-miR166e mature miRNA
Sequence 118 - UCGGACCAGGCUUCAUUCCCU - 138
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25826400
    Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
    Poudel S, Aryal N, Lu C
    PLoS One (2015) 10:e0121542