miRBase entry: cas-MIR171b

Stem-loop cas-MIR171b


Accession
MI0037206
Description
Camelina sativa cas-MIR171b precursor miRNA


Sequence

gcgagauauuagugcgguucaaucaaauagucguccucuuuaacuuauggagaucgguguuguucgaUUGAGCCGUGCCAAUAUCACGc
(((.((((((.(((((((((((((.((((((((..((((.........))))..)))..))))).))))))))))))).)))))).)))

Structure
   a      a             a     --   uc    uua 
gcg gauauu gugcgguucaauc aauag  ucg  cucu   a
||| |||||| ||||||||||||| |||||  |||  ||||   c
cGC CUAUAA CGUGCCGAGUUag uuguu  ggc  gagg   u
   A      C             c     gu   ua    uau 


Annotation confidence Not enough data
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Genome context
chr3: 5196194-5196282 [-]

Database links

Mature cas-miR171b

Accession MIMAT0045322
Description Camelina sativa cas-miR171b mature miRNA
Sequence 68 - UUGAGCCGUGCCAAUAUCACG - 88
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25826400
    Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
    Poudel S, Aryal N, Lu C
    PLoS One (2015) 10:e0121542