miRBase entry: cas-MIR173

Stem-loop cas-MIR173


Accession
MI0037212
Description
Camelina sativa cas-MIR173 precursor miRNA

Literature search
1 open access papers mention cas-MIR173
(1 sentences)

Sequence

ccUUCGCUUGCAGAGAGAAAUCACaguguggucaaaagcuuuuuaagucuuuuuuaaagucucuuuccucugugauucucugugcaagcuaaag
.....(((((((.((((((.((((((...((......(((((..((.....))..)))))......)).)))))))))))).))))))).....

Structure
ccUUC       G      A      ugu  ucaaaa     uu  g 
     GCUUGCA AGAGAA UCACag   gg      gcuuu  aa u
     ||||||| |||||| ||||||   ||      |||||  || c
     cgaacgu ucucuu aguguc   cc      ugaaa  uu u
gaaau       g      -      --u  uuucuc     uu  u 


Annotation confidence Not enough data
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Genome context
chr15: 14724141-14724234 [+]

Database links

Mature cas-miR173

Accession MIMAT0045330
Description Camelina sativa cas-miR173 mature miRNA
Sequence 3 - UUCGCUUGCAGAGAGAAAUCAC - 24
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25826400
    Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
    Poudel S, Aryal N, Lu C
    PLoS One (2015) 10:e0121542