Stem-loop cas-MIR5139

Accession

MI0037245

Description

Camelina sativa cas-MIR5139 precursor miRNA

Sequence

gcacAAACCUGGCUCUGAUACCAcauaauacgaacucccuaggaugaaacucugauggaggcugaugacagguaaguggcgacgugaauugauggugaugaugcacagguggauugc
(((...(((((((((...(((((((...((((..((((...(((......)))...))))(((..(........)..)))..))))...)).)))))..)).)).)))))....)))

Structure

   -cAA     -  -  UGA     -  uaa    --------------------aa    cua   ug 
gca    ACCUG GC UC   UACCA ca   uacg                      cucc   gga  a
|||    ||||| || ||   ||||| ||   ||||                      ||||   |||   
cgu    uggac cg ag   guggu gu   gugc                      gagg   ucu  a
   uagg     a  u  -ua     a  uaa    agcggugaauggacaguagucg    uag   ca 

Annotation confidence Not enough data

Genome context

chr14: 19733884-19734000 [+]

Mature cas-miR5139

• Accession: MIMAT0045368
• Description: Camelina sativa cas-miR5139 mature miRNA
• Sequence: 5 - AAACCUGGCUCUGAUACCA - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542