miRBase entry: cas-MIR9560

Stem-loop cas-MIR9560


Accession
MI0037247
Description
Camelina sativa cas-MIR9560 precursor miRNA


Sequence

uugACAGGUGGUGGAACAAAUAUGAGUuuauuauauuaaucagaaaacaaauaaaacucauauuuaguucuaccuccuguuga
((((((((.((((((((((((((((((((........................)))))))))))).)))))))).))))))))

Structure
        U        -            auuauauuaau 
uugACAGG GGUGGAAC AAAUAUGAGUuu           c
|||||||| |||||||| ||||||||||||            
aguugucc ccaucuug uuuauacucaaa           a
        u        a            auaaacaaaag 


Annotation confidence Not enough data
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Genome context
chr8: 12077148-12077230 [+]

Database links

Mature cas-miR9560

Accession MIMAT0045370
Description Camelina sativa cas-miR9560 mature miRNA
Sequence 4 - ACAGGUGGUGGAACAAAUAUGAGU - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25826400
    Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
    Poudel S, Aryal N, Lu C
    PLoS One (2015) 10:e0121542