miRBase entry: cas-MIR11592

Stem-loop cas-MIR11592


Accession
MI0037248
Description
Camelina sativa cas-MIR11592 precursor miRNA


Sequence

aaccgaaccGAACCGAACCGAACCGAAAaaauaacuuuuuccaauuugguauuuuuguauugguauguuugcuuaauuucgguu
(((((((...((.(((((...((((((((((((.((...........)))))))))...)))))..))))).))...)))))))

Structure
       ccG  C     CGA     ---       a  uuuu 
aaccgaa   AA CGAAC   ACCGA   AAaaaua cu    c
|||||||   || |||||   |||||   ||||||| ||    c
uuggcuu   uu guuug   ugguu   uuuuuau gg    a
       uaa  c     -ua     aug       -  uuua 


Annotation confidence Not enough data
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Genome context
chr14: 12458730-12458813 [+]

Database links

Mature cas-miR11592

Accession MIMAT0045371
Description Camelina sativa cas-miR11592 mature miRNA
Sequence 10 - GAACCGAACCGAACCGAAA - 28
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25826400
    Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
    Poudel S, Aryal N, Lu C
    PLoS One (2015) 10:e0121542