miRBase entry: bdo-mir-998

Stem-loop bdo-mir-998


Accession
MI0037255
Description
Bactrocera dorsalis bdo-mir-998 precursor miRNA


Sequence

acugaauucucgugguucugcauugcauaccaugacgagguaaacguauuguaauugaaauuuugUAGCACCAUGAGAUUCAGCUC
.((((((.((((((((.((((((((((((((.......)))).......))))).........))))).))))))))))))))...

Structure
--a      u        u     ---------     -------    au 
   cugaau cucguggu cugca         uugca       uacc  g
   |||||| |||||||| |||||         |||||       ||||  a
   GACUUA GAGUACCA GAUgu         aaugu       augg  c
CUC      -        C     uuuaaaguu     uaugcaa    ag 


Annotation confidence Not enough data
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Genome context
scaffold00005: 2326077-2326162 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bdo-mir-998
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdo-miR-998

Accession MIMAT0045378
Description Bactrocera dorsalis bdo-miR-998 mature miRNA
Sequence 66 - UAGCACCAUGAGAUUCAGCUC - 86
Evidence experimental
Torrent [1]

References

  1. PubMed ID: 26438165
    MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae
    Calla B, Geib SM
    BMC Genomics (2015) 16:740