miRBase entry: bdo-let-7

Stem-loop bdo-let-7


Accession
MI0037269
Description
Bactrocera dorsalis bdo-let-7 precursor miRNA

Literature search
2 open access papers mention bdo-let-7
(8 sentences)

Sequence

UGAGGUAGUAGGUUGUAUAGUaguauuaacggcaugcuauacaacgugcuagcuuucu
.(((.(((((.(((((((((((((.......)).))))))))))).))))).)))...

Structure
--U   G     G           -  au 
   GAG UAGUA GUUGUAUAGUa gu  u
   ||| ||||| ||||||||||| ||  a
   uuc aucgu caacauaucgu cg  a
ucu   g     g           a  gc 


Annotation confidence Not enough data
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Genome context
scaffold00010: 2862318-2862375 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from bdo-let-7
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdo-let-7

Accession MIMAT0045392
Description Bactrocera dorsalis bdo-let-7 mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUAGU - 21
Evidence experimental
Torrent [1]

References

  1. PubMed ID: 26438165
    MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae
    Calla B, Geib SM
    BMC Genomics (2015) 16:740