miRBase entry: bdo-mir-11

Stem-loop bdo-mir-11

Accession

MI0037312

Description

Bactrocera dorsalis bdo-mir-11 precursor miRNA

Literature search

1 open access papers mention bdo-mir-11
(2 sentences)

Sequence

cgggagcucuggcugugauuugcguuucacaaucaaauuucauuucgCAUCACAGUCUGAGUUCUUGCU
(((((((((.((((((((..((((.....................)))))))))))).)))))))))..

Structure

--         u        uu    uuucacaau 
  cgggagcuc ggcuguga  ugcg         c
  ||||||||| ||||||||  ||||         a
  GUUCUUGAG CUGACACU  ACgc         a
UC         U        --    uuuacuuua

Annotation confidence Not enough data

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Genome context

scaffold00005: 2323679-2323747 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bdo-mir-11

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bdo-miR-11

Accession	MIMAT0045434
Description	Bactrocera dorsalis bdo-miR-11 mature miRNA
Sequence	48 - CAUCACAGUCUGAGUUCUUGCU - 69
Evidence	experimental Torrent [1]

References

PubMed ID: 26438165
MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae
Calla B, Geib SM
BMC Genomics (2015) 16:740