miRBase entry: bdo-mir-309b

Stem-loop bdo-mir-309b


Accession
MI0037326
Description
Bactrocera dorsalis bdo-mir-309b precursor miRNA

Literature search
2 open access papers mention bdo-mir-309b
(2 sentences)

Sequence

cggcaaacuauauucagcuguggugucaacuccuguacaauuuucugcaUCACUGGGUAAAGUUUGUCCU
.((((((((.((((((...(((((((....................))))))))))))).))))))))..

Structure
-c        a      gcu       caacuccug 
  ggcaaacu uauuca   guggugu         u
  |||||||| ||||||   |||||||          
  CUGUUUGA AUGGGU   CACUacg         a
UC        A      ---       ucuuuuaac 


Annotation confidence Not enough data
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Genome context
scaffold00054: 205267-205336 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from bdo-mir-309b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bdo-miR-309b

Accession MIMAT0045447
Description Bactrocera dorsalis bdo-miR-309b mature miRNA
Sequence 50 - UCACUGGGUAAAGUUUGUCCU - 70
Evidence experimental
Torrent [1]

References

  1. PubMed ID: 26438165
    MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae
    Calla B, Geib SM
    BMC Genomics (2015) 16:740