Stem-loop pla-MIR11603

Accession

MI0037335

Description

Paeonia lactiflora pla-MIR11603 precursor miRNA

Literature search

1 open access papers mention pla-MIR11603
(1 sentences)

Sequence

guuucuagggUUAUAAUUAGGUUGAGCGGACucauuucucgaucucucaauuucuguuuuauauaauuacaauuacugaaccccaaaccuuaauugacggaugccgcaugcgaagaacucuaaacccuucuuugcucggugaaggcaagcuaaacucaggugguuuuguacuucuauguuuccagaucgcugaggagaucaagaacuccagaucaaaguugacaccggcucuguuuuaagcaucuuucauguuaauuauuaccugucagaaauu
((((((.((((.((((((((..((((.(((.....((((.(((((((((...((((...((((.((.((((......(((((((.........(((.(...(((((...((((((((..........)))))))).)))))...))))..........)).))))))))).)).))))....))))....))).)))))).)))).)))(((.((.(((((....))))).)).)))........))))..)))))))).))))...)))))).

Structure

-      --a    U        GU    -----------------------------------C   Cucau    c      -   -auu    -uuu    u  u    auuacu     -  -aaaccuuaa   a gga     cau        cucu 
 guuucu   gggU AUAAUUAG  UGAG                                    GGA     uucu gaucuc uca    ucug    uaua aa uaca      gaacc cc          uug c   ugccg   gcgaagaa    a
 ||||||   |||| ||||||||  ||||                                    |||     |||| |||||| |||    ||||    |||| || ||||      ||||| ||          ||| |   |||||   ||||||||     
 uaaaga   ucca uauuaauu  acuu                                    ccu     aaga cuagag agu    agac    guau uu augu      uuugg gg          aac g   guggc   cguuucuu    a
u      cug    u        gu    ucuacgaauuuugucucggccacaguugaaacuaga   ----c    a      g   cgcu    cuuu    c  c    ------     u  acucaaaucg   - gaa     --u        ccca 

Annotation confidence Not enough data

Genome context

Unknown

Mature pla-miR11603

• Accession: MIMAT0045456
• Description: Paeonia lactiflora pla-miR11603 mature miRNA
• Sequence: 11 - UUAUAAUUAGGUUGAGCGGAC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26393656
   Identification of miRNAs Responsive to Botrytis cinerea in Herbaceous Peony (Paeonia lactiflora Pall.) by High-Throughput Sequencing
   Zhao D, Gong S, Hao Z, Tao J
   Genes (Basel) (2015) 6:918-934