miRBase entry: tca-mir-3851l-1

Stem-loop tca-mir-3851l-1


Accession
MI0037353
Description
Tribolium castaneum tca-mir-3851l-1 precursor miRNA


Sequence

gaauaaauuuagugcugGGUUGGCAUAAGGUGGUACCAUGuaacauuuuaacccaUAGUACGACCCAUGCCGACUCAguaauaaauuacaau
.....((((((.((((((((((((((..(((.((((.(((.............))).)))).))).)))))))))))))).)))))).....

Structure
gaaua      g              AA   G    C   uaaca 
     aauuua ugcugGGUUGGCAU  GGU GUAC AUG     u
     |||||| ||||||||||||||  ||| |||| |||     u
     uuaaau augACUCAGCCGUA  CCA CAUG Uac     u
uaaca      a              -C   G    A   ccaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ChLG2: 1336237-1336328 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from tca-mir-3851l-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3851l-5p

Accession MIMAT0045476
Description Tribolium castaneum tca-miR-3851l-5p mature miRNA
Sequence 18 - GGUUGGCAUAAGGUGGUACCAUG - 40
Evidence experimental
Illumina [1]

Mature tca-miR-3851l-3p

Accession MIMAT0045477
Description Tribolium castaneum tca-miR-3851l-3p mature miRNA
Sequence 56 - UAGUACGACCCAUGCCGACUCA - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96