miRBase entry: tca-mir-11617c

Stem-loop tca-mir-11617c

Accession

MI0037354

Description

Tribolium castaneum tca-mir-11617c precursor miRNA

Sequence

uuuccgaauucacuguugAGUUGGCAUAGAGUAGUACUGUAuggaauaugauaauuaUUGUACUUCCUAUGACAGCUUacuaaugaauucaaauu
.....(((((((.((.(((((((.(((((.(.(((((.(((..............))).))))).)))))).))))))).)).))))))).....

Structure

uuucc       c  u       G     A U     U   uggaau 
     gaauuca ug ugAGUUG CAUAG G AGUAC GUA      a
     ||||||| || ||||||| ||||| | ||||| |||       
     cuuaagu au aUUCGAC GUAUC C UCAUG Uau      u
uuaaa       a  c       A     - U     U   uaauag

Annotation confidence Not enough data

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Genome context

ChLG2: 1355378-1355472 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from tca-mir-11617c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11617c-5p

Accession	MIMAT0045478
Description	Tribolium castaneum tca-miR-11617c-5p mature miRNA
Sequence	19 - AGUUGGCAUAGAGUAGUACUGUA - 41
Evidence	experimental Illumina [1]

Mature tca-miR-11617c-3p

Accession	MIMAT0045479
Description	Tribolium castaneum tca-miR-11617c-3p mature miRNA
Sequence	58 - UUGUACUUCCUAUGACAGCUU - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96