miRBase entry: tca-mir-3836c-1

Stem-loop tca-mir-3836c-1


Accession
MI0037355
Description
Tribolium castaneum tca-mir-3836c-1 precursor miRNA


Sequence

uuuccgaaauugcugccAGGUCCACCUUUUGCUUUUGUUGAUauuuauuuaacuauCACUGGGCAAGGUAGACCUUGGaguuguuucuuaaa
.....(((((.(((.(((((((.((((..(((((..((.((((..........)))))).))))))))).)))).)))))).))))).....

Structure
uuucc     u   g   -    C    UU     UU  U    uuua 
     gaaau gcu ccA GGUC ACCU  UGCUU  GU GAUa    u
     ||||| ||| ||| |||| ||||  |||||  || ||||     
     cuuug uga GGU CCAG UGGA  ACGGG  CA Cuau    u
aaauu     u   -   U    A    --     -U  -    caau 


Annotation confidence Not enough data
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Genome context
ChLG2: 1355772-1355863 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from tca-mir-3836c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3836c-5p

Accession MIMAT0045480
Description Tribolium castaneum tca-miR-3836c-5p mature miRNA
Sequence 18 - AGGUCCACCUUUUGCUUUUGUUGAU - 42
Evidence experimental
Illumina [1]

Mature tca-miR-3836c-1-3p

Accession MIMAT0045481
Description Tribolium castaneum tca-miR-3836c-1-3p mature miRNA
Sequence 57 - CACUGGGCAAGGUAGACCUUGG - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96