miRBase entry: tca-mir-3851n-1

Stem-loop tca-mir-3851n-1

Accession

MI0037356

Description

Tribolium castaneum tca-mir-3851n-1 precursor miRNA

Sequence

auuuuugaguaaauuuaguacugGGUUGGCACAGAGUAGUACUGUGuaaaauucuauuucaUAGUACGACCCAUGCCGGCCUAguaagaaauuucaauucaccagc
.....(((((((((((..(((((((((((((..(.((.((((((((.(((......))))))))))).)))..)))))))))))))..))))))..))))).....

Structure

auuuu     --      ag             CA A  A        u   au 
     ugagu  aaauuu  uacugGGUUGGCA  G GU GUACUGUG aaa  u
     |||||  ||||||  |||||||||||||  | || |||||||| |||   
     acuua  uuuaaa  augAUCCGGCCGU  C CA CAUGAUac uuu  c
cgacc     ac      ga             AC -  G        -   au

Annotation confidence Not enough data

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Genome context

ChLG2: 1361328-1361433 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from tca-mir-3851n-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851n-5p

Accession	MIMAT0045482
Description	Tribolium castaneum tca-miR-3851n-5p mature miRNA
Sequence	24 - GGUUGGCACAGAGUAGUACUGUG - 46
Evidence	experimental Illumina [1]

Mature tca-miR-3851n-3p

Accession	MIMAT0045483
Description	Tribolium castaneum tca-miR-3851n-3p mature miRNA
Sequence	62 - UAGUACGACCCAUGCCGGCCUA - 83
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96