miRBase entry: tca-mir-3836d

Stem-loop tca-mir-3836d


Accession
MI0037358
Description
Tribolium castaneum tca-mir-3836d precursor miRNA


Sequence

uuuucguaauuucugcucGGUCUAUCCCUGCUUUGGUUGAUAUUUauuuaauuaUCACUGGGCAAAGUAGGCCCUGcaguaguuucuucaa
.....(.((((.((((..(((((((...(((((.(((.((((..........))))))))))))..)))))))..)))).)))).).....

Structure
uuuuc u    u    uc       CCC     U   U    UUUa 
     g aauu cugc  GGUCUAU   UGCUU GGU GAUA    u
     | |||| ||||  |||||||   ||||| ||| ||||     
     c uuga gacG  CCGGAUG   ACGGG UCA CUau    u
aacuu u    u    UC       -AA     -   -    uaau 


Annotation confidence Not enough data
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Genome context
ChLG2: 2691160-2691250 [+]
Clustered miRNAs
21 other miRNAs are < 10 kb from tca-mir-3836d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3836d-5p

Accession MIMAT0045486
Description Tribolium castaneum tca-miR-3836d-5p mature miRNA
Sequence 19 - GGUCUAUCCCUGCUUUGGUUGAUAUUU - 45
Evidence experimental
Illumina [1]

Mature tca-miR-3836d-3p

Accession MIMAT0045487
Description Tribolium castaneum tca-miR-3836d-3p mature miRNA
Sequence 55 - UCACUGGGCAAAGUAGGCCCUG - 76
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96