miRBase entry: tca-mir-3836c-2

Stem-loop tca-mir-3836c-2

Accession

MI0037359

Description

Tribolium castaneum tca-mir-3836c-2 precursor miRNA

Sequence

uuuucgaaauuucugccAGGUCCACCUUUUGCUUUUGUUGAUauuuauuuaucuaUCAUUGGGCAAGGUAGACCCUGgagugguuucuuaaa
.....((((((.((.(((((((.((((..(((((.((..((((......))))...))..))))))))).)).))))))).)))))).....

Structure

uuuuc      u  g     -  C    UU     -U  -UU    uu 
     gaaauu cu ccAGG UC ACCU  UGCUU  UG   GAUa  u
     |||||| || ||||| || ||||  |||||  ||   ||||   
     cuuugg ga gGUCC AG UGGA  ACGGG  AC   cuau  a
aaauu      u  -     C  A    --     UU  Uau    uu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

ChLG2: 2689646-2689737 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from tca-mir-3836c-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3836c-5p

Accession	MIMAT0045480
Description	Tribolium castaneum tca-miR-3836c-5p mature miRNA
Sequence	18 - AGGUCCACCUUUUGCUUUUGUUGAU - 42
Evidence	experimental Illumina [1]

Mature tca-miR-3836c-2-3p

Accession	MIMAT0045488
Description	Tribolium castaneum tca-miR-3836c-2-3p mature miRNA
Sequence	56 - UCAUUGGGCAAGGUAGACCCUG - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96