miRBase entry: tca-mir-11618b-1

Stem-loop tca-mir-11618b-1


Accession
MI0037363
Description
Tribolium castaneum tca-mir-11618b-1 precursor miRNA


Sequence

caaaauguuuucgauacuuAGUUAGCAUUGGCUGUUUCUAUGcuauuuuauggucaUAGUACAGCCAGUGCUCACUUCauuucggauucaauaac
.....((..(((((.....(((.((((((((((((..(((((((((...)))).))))).)))))))))))).))).....)))))..)).....

Structure
caaaa  uu     uacuu   U            UU     -    u 
     ug  uucga     AGU AGCAUUGGCUGU  CUAUG cuau  
     ||  |||||     ||| ||||||||||||  ||||| |||| u
     ac  aggcu     UCA UCGUGACCGACA  GAUac ggua  
caaua  uu     uuaCU   C            -U     u    u 


Annotation confidence Not enough data
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Genome context
ChLG2: 2686697-2686791 [+]
Clustered miRNAs
21 other miRNAs are < 10 kb from tca-mir-11618b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11618b-5p

Accession MIMAT0045495
Description Tribolium castaneum tca-miR-11618b-5p mature miRNA
Sequence 20 - AGUUAGCAUUGGCUGUUUCUAUG - 42
Evidence experimental
Illumina [1]

Mature tca-miR-11618b-3p

Accession MIMAT0045496
Description Tribolium castaneum tca-miR-11618b-3p mature miRNA
Sequence 57 - UAGUACAGCCAGUGCUCACUUC - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96