miRBase entry: tca-mir-3836e

Stem-loop tca-mir-3836e


Accession
MI0037364
Description
Tribolium castaneum tca-mir-3836e precursor miRNA


Sequence

auuuucugcUUGGUCUAUCCUUGCUUUGGUUGAUauuuauuuaauuaUCACUGGGCAAAGUAGACCUUGcaguaguu
.....((((..(((((((..((((((.(((.((((..........))))))))))))).)))))))..)))).....

Structure
auuuu    UU       CC      U   U    uuua 
     cugc  GGUCUAU  UUGCUU GGU GAUa    u
     ||||  |||||||  |||||| ||| ||||     
     gacG  CCAGAUG  AACGGG UCA CUau    u
uugau    UU       -A      -   -    uaau 


Annotation confidence Not enough data
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Genome context
ChLG2: 2686164-2686240 [+]
Clustered miRNAs
21 other miRNAs are < 10 kb from tca-mir-3836e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3836e-5p

Accession MIMAT0045497
Description Tribolium castaneum tca-miR-3836e-5p mature miRNA
Sequence 10 - UUGGUCUAUCCUUGCUUUGGUUGAU - 34
Evidence experimental
Illumina [1]

Mature tca-miR-3836e-3p

Accession MIMAT0045498
Description Tribolium castaneum tca-miR-3836e-3p mature miRNA
Sequence 48 - UCACUGGGCAAAGUAGACCUUG - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96