miRBase entry: tca-mir-3851o-1

Stem-loop tca-mir-3851o-1


Accession
MI0037368
Description
Tribolium castaneum tca-mir-3851o-1 precursor miRNA


Sequence

uauuaaauuuagugcuuGGUUGGCGUAGAGUGGUACCAUGuaaaauuuuaauccaUAGUACGACCCAUUCCGGCCCAguaauaaauuaaaau
.....((((((.((((.((((((.((.(.((.((((.(((.............))).)))).))).)).)))))).)))).)))))).....

Structure
uauua      g    u      C  A A  G    C   uaaaa 
     aauuua ugcu GGUUGG GU G GU GUAC AUG     u
     |||||| |||| |||||| || | || |||| |||     u
     uuaaau augA CCGGCC UA C CA CAUG Uac     u
uaaaa      a    C      U  C -  G    A   cuaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ChLG2: 2684529-2684620 [+]
Clustered miRNAs
21 other miRNAs are < 10 kb from tca-mir-3851o-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3851o-3p

Accession MIMAT0045492
Description Tribolium castaneum tca-miR-3851o-3p mature miRNA
Sequence 56 - UAGUACGACCCAUUCCGGCCCA - 77
Evidence experimental
Illumina [1]

Mature tca-miR-3851o-5p

Accession MIMAT0045504
Description Tribolium castaneum tca-miR-3851o-5p mature miRNA
Sequence 18 - GGUUGGCGUAGAGUGGUACCAUG - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96