miRBase entry: tca-mir-11619f

Stem-loop tca-mir-11619f

Accession

MI0037372

Description

Tribolium castaneum tca-mir-11619f precursor miRNA

Sequence

aaauuaucgaaugagagaUGAGAGUUUGUGAUAAUCUUCAUUuuagaauuuaacaAAUGAGGAGUCACAGACUUGAUcuuucgcucgauugcuc
.....(((((.((((((((..(((((((((((..(((((((((...........)))))))))))))))))))).)))))))).))))).....

Structure

aaauu     a        GA           AA         uaga 
     aucga ugagagaU  GAGUUUGUGAU  UCUUCAUUu    a
     ||||| ||||||||  |||||||||||  |||||||||    u
     uagcu gcuuucUA  UUCAGACACUG  AGGAGUAAa    u
cucgu     c        -G           --         caau

Annotation confidence Not enough data

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Genome context

ChLG2: 2681738-2681831 [+]

Clustered miRNAs

19 other miRNAs are < 10 kb from tca-mir-11619f

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11619f-5p

Accession	MIMAT0045508
Description	Tribolium castaneum tca-miR-11619f-5p mature miRNA
Sequence	19 - UGAGAGUUUGUGAUAAUCUUCAUU - 42
Evidence	experimental Illumina [1]

Mature tca-miR-11619f-3p

Accession	MIMAT0045509
Description	Tribolium castaneum tca-miR-11619f-3p mature miRNA
Sequence	56 - AAUGAGGAGUCACAGACUUGAU - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96