miRBase entry: tca-mir-11620

Stem-loop tca-mir-11620


Accession
MI0037373
Description
Tribolium castaneum tca-mir-11620 precursor miRNA


Sequence

ccgcauguucuagccccuccggcggugcccCAGGUCAACGGAGCCGUGCAUCCugacgauaucaacgugAUGCCCGGACCGGUGCCCCAUGucaacgccgcgggccaaggacaggucc
..((.((((((.((((...(((((.((.(...((.((.(((..(((.(((((...(((.......)))))))).))).))).)).))...).)).))))).))))..)))))).))..

Structure
cc  a      -a    cuc     g  c cCA  U  A   AG   U     Cug   au 
  gc uguucu  gccc   cggcg ug c   GG CA CGG  CCG GCAUC   acg  a
  || ||||||  ||||   ||||| || |   || || |||  ||| |||||   |||  u
  ug acagga  cggg   gccgc ac G   CC GU GCC  GGC CGUAg   ugc  c
cc  g      ac    --c     a  u UAC  C  G   -A   C     ---   aa 


Annotation confidence Not enough data
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Genome context
ChLG2: 8256973-8257090 [+]

Database links

Mature tca-miR-11620-5p

Accession MIMAT0045510
Description Tribolium castaneum tca-miR-11620-5p mature miRNA
Sequence 31 - CAGGUCAACGGAGCCGUGCAUCC - 53
Evidence experimental
Illumina [1]

Mature tca-miR-11620-3p

Accession MIMAT0045511
Description Tribolium castaneum tca-miR-11620-3p mature miRNA
Sequence 70 - AUGCCCGGACCGGUGCCCCAUG - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96