miRBase entry: tca-mir-11621

Stem-loop tca-mir-11621


Accession
MI0037376
Description
Tribolium castaneum tca-mir-11621 precursor miRNA


Sequence

caaccaacuuuccuugagaAUAAAGCGUAUUUGUCGUUGCAuccuuaacauaaacgCAACGAUUCAGGUGCUUUUCUUucaaucaaaguuaauac
.....((((((..((((((..((((((.....((((((((...............)))))))).....))))))..))))))..)))))).....

Structure
caacc      cc      AU      UAUUU        Auccuu 
     aacuuu  uugaga  AAAGCG     GUCGUUGC      a
     ||||||  ||||||  ||||||     ||||||||      a
     uugaaa  aacuUU  UUUCGU     UAGCAACg      c
cauaa      cu      CU      GGACU        caaaua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ChLG2: 1363442-1363536 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from tca-mir-11621
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11621-5p

Accession MIMAT0045513
Description Tribolium castaneum tca-miR-11621-5p mature miRNA
Sequence 20 - AUAAAGCGUAUUUGUCGUUGCA - 41
Evidence experimental
Illumina [1]

Mature tca-miR-11621-3p

Accession MIMAT0045514
Description Tribolium castaneum tca-miR-11621-3p mature miRNA
Sequence 57 - CAACGAUUCAGGUGCUUUUCUU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96