miRBase entry: tca-mir-11624d

Stem-loop tca-mir-11624d

Accession

MI0037388

Description

Tribolium castaneum tca-mir-11624d precursor miRNA

Sequence

uaauagauugguguaaaAUUGGGACUUUAGCAUUUUCAUGcaauuuauaucaucaUGAUGUGCUAAUGUGUCGGUUUuacaacaaucacaaa
.....(((((.(((((((((((.((.(((((((..(((((.............))))).))))))).)).))))))))))).))))).....

Structure

uaaua     g           G  U       UU     caauu 
     gauug uguaaaAUUGG AC UUAGCAU  UCAUG     u
     ||||| ||||||||||| || |||||||  |||||     a
     cuaac acauUUUGGCU UG AAUCGUG  AGUac     u
aaaca     a           G  U       -U     uacua

Annotation confidence Not enough data

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Genome context

ChLG6: 8930530-8930621 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from tca-mir-11624d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11624d-5p

Accession	MIMAT0045532
Description	Tribolium castaneum tca-miR-11624d-5p mature miRNA
Sequence	18 - AUUGGGACUUUAGCAUUUUCAUG - 40
Evidence	experimental Illumina [1]

Mature tca-miR-11624d-3p

Accession	MIMAT0045533
Description	Tribolium castaneum tca-miR-11624d-3p mature miRNA
Sequence	56 - UGAUGUGCUAAUGUGUCGGUUU - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96