miRBase entry: tca-mir-3851j

Stem-loop tca-mir-3851j

Accession

MI0037390

Description

Tribolium castaneum tca-mir-3851j precursor miRNA

Sequence

aauaauaaauauggugaugAGUUGAUUUGGGGUGGUACUAUGuuugaagauacgcaUAGUACGUUCCGAAUCAACUUGuuaacaaauuuaaauuc
.....(((((.((..(((((((((((((((((..(((((((((..........))))))))).)))))))))))))))))..)).))))).....

Structure

aauaa     a  gu                 UG         uuga 
     uaaau ug  gaugAGUUGAUUUGGGG  GUACUAUGu    a
     ||||| ||  |||||||||||||||||  |||||||||     
     auuua ac  uuGUUCAACUAAGCCUU  CAUGAUacg    g
cuuaa     a  aa                 -G         caua

Annotation confidence Not enough data

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Genome context

ChLG6: 273130-273224 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from tca-mir-3851j

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851j-5p

Accession	MIMAT0045536
Description	Tribolium castaneum tca-miR-3851j-5p mature miRNA
Sequence	20 - AGUUGAUUUGGGGUGGUACUAUG - 42
Evidence	experimental Illumina [1]

Mature tca-miR-3851j-3p

Accession	MIMAT0045537
Description	Tribolium castaneum tca-miR-3851j-3p mature miRNA
Sequence	57 - UAGUACGUUCCGAAUCAACUUG - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96