miRBase entry: tca-mir-11627

Stem-loop tca-mir-11627

Accession

MI0037395

Description

Tribolium castaneum tca-mir-11627 precursor miRNA

Sequence

aguguaggcgauuuugACCCAUCUUCAGACAACUCUGGauuguuuuaaauguccaCGAGUUUGCUUUUGAUGGGAGAucaauagucuuuuag
.....((((....((((((((((...((..((((((((((..........))))).)))))..))...))))))...))))..)))).....

Structure

agugu    gauu    ---      UUC  AC     -     uguu 
     aggc    uugA   CCCAUC   AG  AACUC UGGau    u
     ||||    ||||   ||||||   ||  ||||| |||||     
     ucug    aacu   GGGUAG   UC  UUGAG accug    u
gauuu    --au    AGA      UUU  GU     C     uaaa

Annotation confidence Not enough data

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Genome context

ChLG7: 11855707-11855798 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-11627

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11627-5p

Accession	MIMAT0045546
Description	Tribolium castaneum tca-miR-11627-5p mature miRNA
Sequence	17 - ACCCAUCUUCAGACAACUCUGG - 38
Evidence	experimental Illumina [1]

Mature tca-miR-11627-3p

Accession	MIMAT0045547
Description	Tribolium castaneum tca-miR-11627-3p mature miRNA
Sequence	56 - CGAGUUUGCUUUUGAUGGGAGA - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96