miRBase entry: tca-mir-3851l-3

Stem-loop tca-mir-3851l-3

Accession

MI0037400

Description

Tribolium castaneum tca-mir-3851l-3 precursor miRNA

Sequence

uuuaagcuaaauuuuagugaauuuauugcugUGUUGGCAUAAGUAGUACCAUGaaaaauuugaaucuaUAGUACGACCCAUGCCGACUCAguaauaaauuacaauuccagcaagug
.....(((.((((...((((.((((((((((.((((((((..((.((((.(((.............))).)))).))..)))))))).))))))))))))))))))..))).....

Structure

uuuaa   -a    uua    a          U        AA  A    C   aaaaa 
     gcu  aauu   guga uuuauugcug GUUGGCAU  GU GUAC AUG     u
     |||  ||||   |||| |||||||||| ||||||||  || |||| |||     u
     cga  uuaa   cauu aaauaaugAC CAGCCGUA  CA CAUG Uau     u
gugaa   cc    ---    -          U        CC  G    A   cuaag

Annotation confidence Not enough data

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Genome context

Unmapped79: 1566-1681 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-3851l-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851l-3p

Accession	MIMAT0045477
Description	Tribolium castaneum tca-miR-3851l-3p mature miRNA
Sequence	69 - UAGUACGACCCAUGCCGACUCA - 90
Evidence	experimental Illumina [1]

Mature tca-miR-3851l-3-5p

Accession	MIMAT0045554
Description	Tribolium castaneum tca-miR-3851l-3-5p mature miRNA
Sequence	32 - UGUUGGCAUAAGUAGUACCAUG - 53
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96