miRBase entry: tca-mir-3851m-3

Stem-loop tca-mir-3851m-3

Accession

MI0037404

Description

Tribolium castaneum tca-mir-3851m-3 precursor miRNA

Sequence

uaaguaaauuuaguacugGGUUGGCACAGAGUAGUACUAUGuaaaauucuauuccaUAGUACGACCCAUGUCGGCCCAguaagagauuucaauu
...(.((((((..(((((((((((((..(.((.((((((((.............)))))))).)))..)))))))))))))..)))))))....

Structure

-uaa u      ag             CA A  A        uaaaa 
    g aaauuu  uacugGGUUGGCA  G GU GUACUAUG     u
    | ||||||  |||||||||||||  | || ||||||||     u
    c uuuaga  augACCCGGCUGU  C CA CAUGAUac     c
uuaa -      ga             AC -  G        cuuau

Annotation confidence Not enough data

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Genome context

Unmapped58: 12024-12117 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from tca-mir-3851m-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851m-5p

Accession	MIMAT0045466
Description	Tribolium castaneum tca-miR-3851m-5p mature miRNA
Sequence	19 - GGUUGGCACAGAGUAGUACUAUG - 41
Evidence	experimental Illumina [1]

Mature tca-miR-3851m-3p

Accession	MIMAT0045467
Description	Tribolium castaneum tca-miR-3851m-3p mature miRNA
Sequence	57 - UAGUACGACCCAUGUCGGCCCA - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96