miRBase entry: tca-mir-3851m-2

Stem-loop tca-mir-3851m-2

Accession

MI0037407

Description

Tribolium castaneum tca-mir-3851m-2 precursor miRNA

Sequence

aaguaaauuuaguacugGGUUGGCACAGAGUAGUACUAUGuaaaauucuauuccaUAGUACGACCCAUGUCGGCCCAguaagagauuccaau
.....(((((..(((((((((((((..(.((.((((((((.............)))))))).)))..)))))))))))))..))))).....

Structure

aagua     ag             CA A  A        uaaaa 
     aauuu  uacugGGUUGGCA  G GU GUACUAUG     u
     |||||  |||||||||||||  | || ||||||||     u
     uuaga  augACCCGGCUGU  C CA CAUGAUac     c
uaacc     ga             AC -  G        cuuau

Annotation confidence Not enough data

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Genome context

Unmapped58: 24381-24472 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from tca-mir-3851m-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851m-5p

Accession	MIMAT0045466
Description	Tribolium castaneum tca-miR-3851m-5p mature miRNA
Sequence	18 - GGUUGGCACAGAGUAGUACUAUG - 40
Evidence	experimental Illumina [1]

Mature tca-miR-3851m-3p

Accession	MIMAT0045467
Description	Tribolium castaneum tca-miR-3851m-3p mature miRNA
Sequence	56 - UAGUACGACCCAUGUCGGCCCA - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96