miRBase entry: tca-mir-11618b-4

Stem-loop tca-mir-11618b-4

Accession

MI0037408

Description

Tribolium castaneum tca-mir-11618b-4 precursor miRNA

Sequence

caaaauguuuucgauacuuAGUUAGCAUUGGCUGUUUCUAUGcuaauuuauggucaUAGUACAGCCAAUGUUCGCUUCaguucggauucaauaac
.....((..(((((.(((.(((.((((((((((((..((((((((.....))).))))).)))))))))))).)))..))))))))..)).....

Structure

caaaa  uu     u   -u   U            UU     -   a 
     ug  uucga acu  AGU AGCAUUGGCUGU  CUAUG cua u
     ||  ||||| |||  ||| ||||||||||||  ||||| ||| u
     ac  aggcu uga  UCG UUGUAACCGACA  GAUac ggu u
caaua  uu     -   CU   C            -U     u   a

Annotation confidence Not enough data

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Genome context

Unmapped58: 25826-25920 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from tca-mir-11618b-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11618b-5p

Accession	MIMAT0045495
Description	Tribolium castaneum tca-miR-11618b-5p mature miRNA
Sequence	20 - AGUUAGCAUUGGCUGUUUCUAUG - 42
Evidence	experimental Illumina [1]

Mature tca-miR-11618b-4-3p

Accession	MIMAT0045559
Description	Tribolium castaneum tca-miR-11618b-4-3p mature miRNA
Sequence	57 - UAGUACAGCCAAUGUUCGCUUC - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96