miRBase entry: tca-mir-11619a-2

Stem-loop tca-mir-11619a-2

Accession

MI0037410

Description

Tribolium castaneum tca-mir-11619a-2 precursor miRNA

Sequence

cuuucgaacggaacaCGAAGUCUGUGAUAUUCUUCAUUuuauaaguuaacuaaUGAAGAGUCAUUGGCUUGGUUuuucguucaacac
.....((((((((.((.(((((.(((((..((((((((.............))))))))))))).))))).)).)))))))).....

Structure

cuuuc        c  G     U     AU        uuaua 
     gaacggaa aC AAGUC GUGAU  UCUUCAUU     a
     |||||||| || ||||| |||||  ||||||||     g
     cuugcuuu UG UUCGG UACUG  AGAAGUaa     u
cacaa        U  G     U     --        ucaau

Annotation confidence Not enough data

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Genome context

Unmapped58: 29377-29463 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from tca-mir-11619a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11619a-5p

Accession	MIMAT0045515
Description	Tribolium castaneum tca-miR-11619a-5p mature miRNA
Sequence	16 - CGAAGUCUGUGAUAUUCUUCAUU - 38
Evidence	experimental Illumina [1]

Mature tca-miR-11619a-3p

Accession	MIMAT0045558
Description	Tribolium castaneum tca-miR-11619a-3p mature miRNA
Sequence	54 - UGAAGAGUCAUUGGCUUGGUU - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96