miRBase entry: tca-mir-971b

Stem-loop tca-mir-971b


Accession
MI0037413
Description
Tribolium castaneum tca-mir-971b precursor miRNA

Literature search
1 open access papers mention tca-mir-971b
(2 sentences)

Sequence

agcuuugaguguguauagucggguCACUCUAAGUUUGAACACCAAGCuacauuuagcucguUUGGUGUUCUACCUUACAGUGAGcggacuguacaccaaaucaucacu
.....(((..((((((((((.(.(((((.((((...(((((((((((((....)))))....))))))))...)))).))))).).))))))))))....))).....

Structure
agcuu   --gu          g g     C    UUU        ----     c 
     uga    guguauaguc g uCACU UAAG   GAACACCA    AGCua a
     |||    |||||||||| | ||||| ||||   ||||||||    |||||  
     acu    cacaugucag c AGUGA AUUC   CUUGUGGU    ucgau u
ucacu   aaac          g G     C    CAU        Uugc     u 


Annotation confidence Not enough data
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Genome context
ChLG4: 306463-306570 [-]

Database links

Mature tca-miR-971b-5p

Accession MIMAT0045561
Description Tribolium castaneum tca-miR-971b-5p mature miRNA
Sequence 25 - CACUCUAAGUUUGAACACCAAGC - 47
Evidence experimental
Illumina [1]

Mature tca-miR-971b-3p

Accession MIMAT0045562
Description Tribolium castaneum tca-miR-971b-3p mature miRNA
Sequence 62 - UUGGUGUUCUACCUUACAGUGAG - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96