miRBase entry: tca-mir-11619d

Stem-loop tca-mir-11619d


Accession
MI0037415
Description
Tribolium castaneum tca-mir-11619d precursor miRNA


Sequence

aaacuaucggaugagagaUGAUAGUCUGCGAUAUUCUUCAUUUuauaauuuaacaaAUGAAGAACCUCAGACUUGGUCuuaggcucgauugcu
.....(((((.(..(((((.(.((((((.(...((((((((((...........)))))))))).).))))))).)))))..).)))))....

Structure
aaacu     a ga     G U      C AUA          uaua 
     aucgg u  gagaU A AGUCUG G   UUCUUCAUUU    a
     ||||| |  ||||| | |||||| |   ||||||||||    u
     uagcu g  uuCUG U UCAGAC C   AAGAAGUAaa    u
-ucgu     c ga     G -      U --C          caau 


Annotation confidence Not enough data
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Genome context
ChLG2: 1355663-1355755 [-]
Clustered miRNAs
11 other miRNAs are < 10 kb from tca-mir-11619d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11619d-5p

Accession MIMAT0045565
Description Tribolium castaneum tca-miR-11619d-5p mature miRNA
Sequence 19 - UGAUAGUCUGCGAUAUUCUUCAUUU - 43
Evidence experimental
Illumina [1]

Mature tca-miR-11619d-3p

Accession MIMAT0045566
Description Tribolium castaneum tca-miR-11619d-3p mature miRNA
Sequence 57 - AUGAAGAACCUCAGACUUGGUC - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96