miRBase entry: tca-mir-11625b

Stem-loop tca-mir-11625b

Accession

MI0037417

Description

Tribolium castaneum tca-mir-11625b precursor miRNA

Sequence

aaggcucaaacuugauuuuAAGUAGACAUGAGUGGUAUUUAUGuuauacaucauucaUAAUACUGCUAAUGUUUCCUGUGacucgcuguuugaaaacu
.....((((((.(((.((..((.((((((.(((((((((.(((............)))))))))))).)))))).))..)).)))..)))))).....

Structure

aaggc      -u   u  uA  U      G         U   uuaua 
     ucaaac  uga uu  AG AGACAU AGUGGUAUU AUG     c
     ||||||  ||| ||  || |||||| ||||||||| |||      
     aguuug  gcu aG  UC UUUGUA UCGUCAUAA Uac     a
ucaaa      uc   c  UG  C      A         -   uuacu

Annotation confidence Not enough data

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Genome context

ChLG5: 209017-209114 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from tca-mir-11625b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11625b-5p

Accession	MIMAT0045569
Description	Tribolium castaneum tca-miR-11625b-5p mature miRNA
Sequence	20 - AAGUAGACAUGAGUGGUAUUUAUG - 43
Evidence	experimental Illumina [1]

Mature tca-miR-11625b-3p

Accession	MIMAT0045570
Description	Tribolium castaneum tca-miR-11625b-3p mature miRNA
Sequence	58 - UAAUACUGCUAAUGUUUCCUGUG - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96