miRBase entry: tca-mir-3858a-2

Stem-loop tca-mir-3858a-2

Accession

MI0037420

Description

Tribolium castaneum tca-mir-3858a-2 precursor miRNA

Sequence

cugcaacuguaacaguuuguuguuuuuuAGUGAAGCGAAGUUUUUUCAUUuuaauaaaaaUGAAACUCUUUUGCUUCUCUaauaaauacaaauucauucuuccuaacaguauaua
.....(((((...(((((((.((((.((((.(((((((((...(((((((((....)))))))))...))))))))).)))).)))))))))))...........))))).....

Structure

cugca     --------aac       u    u    U         UUU         a 
     acugu           aguuugu guuu uuAG GAAGCGAAG   UUUCAUUuu a
     |||||           ||||||| |||| |||| |||||||||   |||||||||  
     ugaca           uuaaaca uaaa aaUC CUUCGUUUU   AAAGUaaaa u
auaua     auccuucuuac       -    u    U         CUC         a

Annotation confidence Not enough data

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Genome context

ChLG6: 8930130-8930244 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from tca-mir-3858a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3858a-5p

Accession	MIMAT0045574
Description	Tribolium castaneum tca-miR-3858a-5p mature miRNA
Sequence	29 - AGUGAAGCGAAGUUUUUUCAUU - 50
Evidence	experimental Illumina [1]

Mature tca-miR-3858a-3p

Accession	MIMAT0045575
Description	Tribolium castaneum tca-miR-3858a-3p mature miRNA
Sequence	61 - UGAAACUCUUUUGCUUCUCU - 80
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96