miRBase entry: tca-mir-3851r

Stem-loop tca-mir-3851r

Accession

MI0037427

Description

Tribolium castaneum tca-mir-3851r precursor miRNA

Sequence

uaguucugAGUUGGCAUAGAGUAGUACUAUGuaaaauuuuucuccaUAGUACGACCCAUGCCGGCCCAgugaaa
.....(((.((((((((.(.((.((((((((.............)))))))).))).)))))))).))).....

Structure

uaguu   A        A A  A        uaaaa 
     cug GUUGGCAU G GU GUACUAUG     u
     ||| |||||||| | || ||||||||     u
     gAC CGGCCGUA C CA CAUGAUac     u
aaagu   C        C -  G        cucuu

Annotation confidence Not enough data

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Genome context

Unmapped66: 4524-4597 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tca-mir-3851r

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851r-5p

Accession	MIMAT0045586
Description	Tribolium castaneum tca-miR-3851r-5p mature miRNA
Sequence	9 - AGUUGGCAUAGAGUAGUACUAUG - 31
Evidence	experimental Illumina [1]

Mature tca-miR-3851r-3p

Accession	MIMAT0045587
Description	Tribolium castaneum tca-miR-3851r-3p mature miRNA
Sequence	47 - UAGUACGACCCAUGCCGGCCCA - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96