miRBase entry: tca-mir-11617d-1

Stem-loop tca-mir-11617d-1


Accession
MI0037438
Description
Tribolium castaneum tca-mir-11617d-1 precursor miRNA


Sequence

aGUUGGCAUGGGUGGUACUAUAuauaucauaguaauuauaguacuuucuauggcaacuua
(((((.((((((.(((((((((..(((....)))..))))))))).)))))).)))))..

Structure
--     G      U         ua   c 
  aGUUG CAUGGG GGUACUAUA  uau a
  ||||| |||||| |||||||||  |||  
  ucaac guaucu ucaugauau  aug u
au     g      u         ua   a 


Annotation confidence Not enough data
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Genome context
ChLG2: 1363611-1363670 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from tca-mir-11617d-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11617d-5p

Accession MIMAT0045598
Description Tribolium castaneum tca-miR-11617d-5p mature miRNA
Sequence 2 - GUUGGCAUGGGUGGUACUAUA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96