miRBase entry: tca-mir-11642

Stem-loop tca-mir-11642


Accession
MI0037447
Description
Tribolium castaneum tca-mir-11642 precursor miRNA


Sequence

UGGAAACAUUUGAUCGUACCAUGuuucaguuucaauCAUGGUACGAUUGAUGUUGCCUUa
.((.((((((.((((((((((((.............)))))))))))))))))).))...

Structure
--U  A      U            uuuca 
   GG AACAUU GAUCGUACCAUG     g
   || |||||| ||||||||||||     u
   CC UUGUAG UUAGCAUGGUAC     u
aUU  G      -            uaacu 


Annotation confidence Not enough data
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Genome context
ChLG6: 272831-272890 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from tca-mir-11642
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-11642-5p

Accession MIMAT0045606
Description Tribolium castaneum tca-miR-11642-5p mature miRNA
Sequence 1 - UGGAAACAUUUGAUCGUACCAUG - 23
Evidence experimental
Illumina [1]

Mature tca-miR-11642-3p

Accession MIMAT0045607
Description Tribolium castaneum tca-miR-11642-3p mature miRNA
Sequence 37 - CAUGGUACGAUUGAUGUUGCCUU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26518483
    MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    "Ninova M, Ronshaugen M, Griffiths-Jones S"
    "Genome Res (2016) 26:85-96