miRBase entry: pca-mir-9

Stem-loop pca-mir-9


Accession
MI0037572
Description
Polistes canadensis pca-mir-9 precursor miRNA


Sequence

agaucuuggugcggacauuuUCUUUGGUUAUCUAGCUGUAUGAguuuuguucgacaucAUAAAGCUAGAUUACCGGAGUUaagcuuaguagacuucuaaucuuauuaaga
...((((((((.(((..((..(((((((.((((((((.((((((((......))).))))).)))))))).)))))))..))..((((.......)))))))))))))))

Structure
aga        c   ---------------ca  uU       U        G     -   uu 
   ucuuggug gga                 uu  CUUUGGU AUCUAGCU UAUGA guu  g
   |||||||| |||                 ||  ||||||| |||||||| ||||| |||   
   agaauuau ucu                 aa  GAGGCCA UAGAUCGA AUAcu cag  u
---        -   aaucuucagaugauucg  UU       U        A     a   cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pca-miR-9-5p

Accession MIMAT0045838
Description Polistes canadensis pca-miR-9-5p mature miRNA
Sequence 21 - UCUUUGGUUAUCUAGCUGUAUGA - 43
Evidence experimental
Illumina [1]

Mature pca-miR-9-3p

Accession MIMAT0045839
Description Polistes canadensis pca-miR-9-3p mature miRNA
Sequence 59 - AUAAAGCUAGAUUACCGGAGUU - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26483466
    Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies
    "Patalano S, Vlasova A, Wyatt C, Ewels P, Camara F, Ferreira PG, Asher CL, Jurkowski TP, Segonds-Pichon A, Bachman M, Gonzalez-Navarrete I, Minoche AE, Krueger F, Lowy E, Marcet-Houben M, Rodriguez-Ales JL, Nascimento FS, Balasubramanian S, Gabaldon T, Tar"
    "Proc Natl Acad Sci U S A (2015) 112:13970-13975