miRBase entry: pca-mir-316

Stem-loop pca-mir-316


Accession
MI0037606
Description
Polistes canadensis pca-mir-316 precursor miRNA


Sequence

cgagggugUGUCUUUUUCCGCUUUGCUGCCGcuuaaguagaguucgCCAGCAAAGGGGAACAGGCCGACccuccc
.((((((..((((..((((.(((((((((.((((.....))))..).)))))))).)))).))))..))))))..

Structure
-c      gU    UU    G        - -C    a 
  gagggu  GUCU  UUCC CUUUGCUG C  Gcuu a
  ||||||  ||||  |||| |||||||| |  |||| g
  cuccCA  CGGA  AAGG GAAACGAC g  ugag u
cc      GC    -C    G        C cu    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pca-miR-316-5p

Accession MIMAT0045905
Description Polistes canadensis pca-miR-316-5p mature miRNA
Sequence 9 - UGUCUUUUUCCGCUUUGCUGCCG - 31
Evidence experimental
Illumina [1]

Mature pca-miR-316-3p

Accession MIMAT0045906
Description Polistes canadensis pca-miR-316-3p mature miRNA
Sequence 47 - CCAGCAAAGGGGAACAGGCCGAC - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26483466
    Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies
    "Patalano S, Vlasova A, Wyatt C, Ewels P, Camara F, Ferreira PG, Asher CL, Jurkowski TP, Segonds-Pichon A, Bachman M, Gonzalez-Navarrete I, Minoche AE, Krueger F, Lowy E, Marcet-Houben M, Rodriguez-Ales JL, Nascimento FS, Balasubramanian S, Gabaldon T, Tar"
    "Proc Natl Acad Sci U S A (2015) 112:13970-13975