miRBase entry: pca-mir-1175

Stem-loop pca-mir-1175


Accession
MI0037619
Description
Polistes canadensis pca-mir-1175 precursor miRNA


Sequence

auaauuuggaagauaacagaaggugucuagguuuAAGUGGAGAAGUGGUCUCUAcgcuuuguuaauuaagUGAGAUUCAACUCCUCCAACUUAUuccugguucuuccuagucgu
.......((((((..(((.....)))(((((..(((((((((.(((.(..(((.(((((........))))))))..).))).)))).)))))..))))).)))))).......

Structure
auaauuu      uaacagaaggugu     uu     -    A   G UC   A     ugu 
       ggaaga             cuagg  uAAGU GGAG AGU G  UCU cgcuu   u
       ||||||             |||||  ||||| |||| ||| |  ||| |||||    
       ccuucu             ggucc  AUUCA CCUC UCA C  AGA GUgaa   a
ugcugau      ------------u     uU     A    C   A UU   -     uua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pca-miR-1175-5p

Accession MIMAT0045931
Description Polistes canadensis pca-miR-1175-5p mature miRNA
Sequence 35 - AAGUGGAGAAGUGGUCUCUA - 54
Evidence experimental
Illumina [1]

Mature pca-miR-1175-3p

Accession MIMAT0045932
Description Polistes canadensis pca-miR-1175-3p mature miRNA
Sequence 71 - UGAGAUUCAACUCCUCCAACUUAU - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26483466
    Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies
    "Patalano S, Vlasova A, Wyatt C, Ewels P, Camara F, Ferreira PG, Asher CL, Jurkowski TP, Segonds-Pichon A, Bachman M, Gonzalez-Navarrete I, Minoche AE, Krueger F, Lowy E, Marcet-Houben M, Rodriguez-Ales JL, Nascimento FS, Balasubramanian S, Gabaldon T, Tar"
    "Proc Natl Acad Sci U S A (2015) 112:13970-13975