miRBase entry: pca-mir-6001

Stem-loop pca-mir-6001


Accession
MI0037630
Description
Polistes canadensis pca-mir-6001 precursor miRNA


Sequence

uaaaccacacaguuucauaguaacagagGUGGGUAACGACUGACGGGAAcaucccguauagugauuaaugUUCUCUUUGGUUGUUACCACUAGaauaccauacacgguga
...........................(((((.((((((((((.((((((((...............)))))))).)))))))))))))))....((((......)))).

Structure
uaaaccacacaguuucauaguaacaga     G          C        cccgua 
                           gGUGG UAACGACUGA GGGAAcau      u
                           ||||| |||||||||| ||||||||      a
                           UCACC AUUGUUGGUU CUCUUgua      g
--------aguggcacauaccauaaGA     -          U        auuagu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pca-miR-6001-5p

Accession MIMAT0045949
Description Polistes canadensis pca-miR-6001-5p mature miRNA
Sequence 29 - GUGGGUAACGACUGACGGGAA - 49
Evidence experimental
Illumina [1]

Mature pca-miR-6001-3p

Accession MIMAT0045950
Description Polistes canadensis pca-miR-6001-3p mature miRNA
Sequence 71 - UUCUCUUUGGUUGUUACCACUAG - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26483466
    Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies
    "Patalano S, Vlasova A, Wyatt C, Ewels P, Camara F, Ferreira PG, Asher CL, Jurkowski TP, Segonds-Pichon A, Bachman M, Gonzalez-Navarrete I, Minoche AE, Krueger F, Lowy E, Marcet-Houben M, Rodriguez-Ales JL, Nascimento FS, Balasubramanian S, Gabaldon T, Tar"
    "Proc Natl Acad Sci U S A (2015) 112:13970-13975