miRBase entry: gmo-let-7e-2

Stem-loop gmo-let-7e-2


Accession
MI0037979
Description
Gadus morhua gmo-let-7e-2 precursor miRNA

Literature search
1 open access papers mention gmo-let-7e-2
(2 sentences)

Sequence

UGAGGUAGUAGAUUGAAUAGUUguggggccgaguccucccucugcguuaaCUAUACAAUCUACUGUCUUUCC
.((((((((((((((.(((((((....((.(((......))).))..))))))).))))))))))))))...

Structure
--U              A       uggg  c   uc 
   GAGGUAGUAGAUUG AUAGUUg    gc gag  c
   |||||||||||||| |||||||    || |||   
   UUCUGUCAUCUAAC UAUCaau    cg cuc  u
CCU              A       --ug  u   cc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CAEA01553329.1: 704-775 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gmo-let-7e-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-let-7e-5p

Accession MIMAT0044179
Description Gadus morhua gmo-let-7e-5p mature miRNA
Sequence 1 - UGAGGUAGUAGAUUGAAUAGUU - 22
Evidence experimental
SOLiD [1], Illumina [2]

Mature gmo-let-7e-3p

Accession MIMAT0044180
Description Gadus morhua gmo-let-7e-3p mature miRNA
Sequence 51 - CUAUACAAUCUACUGUCUUUCC - 72
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324