Stem-loop gmo-mir-223a

Accession

MI0037988

Description

Gadus morhua gmo-mir-223a precursor miRNA

Sequence

AGUGUAUUUGACAAGCUGAGCUggacacuaaaagacagagUGUCAGUUUGUCAAAUACCCCA
...(((((((((((((((((((................))).))))))))))))))))....

Structure

-AGU                -   ggacacu 
    GUAUUUGACAAGCUGA GCU       a
    |||||||||||||||| |||        
    CAUAAACUGUUUGACU Uga       a
ACCC                G   gacagaa 

Annotation confidence Not enough data

Genome context

CAEA01406001.1: 328-389 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-223a

Mature gmo-miR-223a-5p

• Accession: MIMAT0046040
• Description: Gadus morhua gmo-miR-223a-5p mature miRNA
• Sequence: 1 - AGUGUAUUUGACAAGCUGAGCU - 22
• Evidence: experimental ; Illumina [1]

Mature gmo-miR-223a-3p

• Accession: MIMAT0046041
• Description: Gadus morhua gmo-miR-223a-3p mature miRNA
• Sequence: 41 - UGUCAGUUUGUCAAAUACCCCA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324