miRBase entry: gmo-mir-27d

Stem-loop gmo-mir-27d


Accession
MI0037990
Description
Gadus morhua gmo-mir-27d precursor miRNA


Sequence

AGGACUUAGCUCGCUUUGUGAACaguugaguagaaagauaaugUUCACAGUGGCUAAGUUCCG
.(((((((((.((((..(((((((.................))))))))))))))))))))..

Structure
-A         U    UU       guugagu 
  GGACUUAGC CGCU  GUGAACa       a
  ||||||||| ||||  |||||||       g
  CUUGAAUCG GUGA  CACUUgu       a
GC         -    --       aauagaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CAEA01040759.1: 457-519 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gmo-mir-27d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gmo-miR-27d-5p

Accession MIMAT0046043
Description Gadus morhua gmo-miR-27d-5p mature miRNA
Sequence 1 - AGGACUUAGCUCGCUUUGUGAAC - 23
Evidence experimental
Illumina [1]

Mature gmo-miR-27d-3p

Accession MIMAT0046044
Description Gadus morhua gmo-miR-27d-3p mature miRNA
Sequence 44 - UUCACAGUGGCUAAGUUCCG - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324