miRBase entry: pte-iab-8-1

Stem-loop pte-iab-8-1


Accession
MI0038012
Description
Parasteatoda tepidariorum pte-iab-8-1 precursor miRNA


Sequence

UACGUAUACUGAAGGUAUACCGGAgagucaauuauuaucAGGAUACAUUCAGUAUACGAAC
..(((((((((((.((((.((.((.............)).)))))).)))))))))))...

Structure
-UA           G    A  G  gaguc 
   CGUAUACUGAA GUAU CC GA     a
   ||||||||||| |||| || ||     a
   GCAUAUGACUU CAUA GG cu     u
CAA           A    -  A  auuau 


Annotation confidence Not enough data
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Genome context
Scf5bK3_497: 896333-896393 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pte-iab-8-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-iab-8-5p

Accession MIMAT0046080
Description Parasteatoda tepidariorum pte-iab-8-5p mature miRNA
Sequence 1 - UACGUAUACUGAAGGUAUACCGGA - 24
Evidence experimental
Illumina [1]

Mature pte-iab-8-3p

Accession MIMAT0046081
Description Parasteatoda tepidariorum pte-iab-8-3p mature miRNA
Sequence 40 - AGGAUACAUUCAGUAUACGAAC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144