Stem-loop sequence pte-mir-2a

Accession

MI0038042 (change log)

Description

Parasteatoda tepidariorum miR-2a stem-loop

Literature search

2 open access papers mention pte-mir-2a
(17 sentences)

Stem-loop

   --   -      ug     u     -u        
5'   cuc ucaagg  gcugu auaug  guguuga 
     ||| ||||||  ||||| |||||  |||||| a
3'   gag aguuuc  cgaca uauac  uauaaua 
   gu   u      gu     c     uu        

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_595: 726238-726302 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-2a

• pte-mir-71-2: Scf5bK3_595: 731101-731161 [-]
• pte-mir-2f: Scf5bK3_595: 730975-731038 [-]
• pte-mir-2a: Scf5bK3_595: 726238-726302 [-]
• pte-mir-2b-1: Scf5bK3_595: 726122-726186 [-]

Database links

• miRBase Tracker:MI0038042

Mature sequence pte-miR-2a-5p

• Accession: MIMAT0046136
• Sequence: 1 - cucucaagguggcuguuauaug - 22
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-2a-3p

• Accession: MIMAT0046137
• Sequence: 43 - uaucacagcugcuuugaugagug - 65
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).