Stem-loop sequence pte-mir-2b-1

Accession

MI0038043 (change log)

Description

Parasteatoda tepidariorum miR-2b-1 stem-loop

Literature search

2 open access papers mention pte-mir-2b-1
(19 sentences)

Stem-loop

   -   -       -         c   uua   au 
5'  guu gucaaag uggcuguga aug   gag  u
    ||| ||||||| ||||||||| |||   |||  u
3'  cga uaguuuc accgacacu uac   uuc  a
   g   g       g         a   ---   gu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: Scf5bK3_595: 726122-726186 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from pte-mir-2b-1

• pte-mir-71-2: Scf5bK3_595: 731101-731161 [-]
• pte-mir-2f: Scf5bK3_595: 730975-731038 [-]
• pte-mir-2a: Scf5bK3_595: 726238-726302 [-]
• pte-mir-2b-1: Scf5bK3_595: 726122-726186 [-]

Database links

• miRBase Tracker:MI0038043

Mature sequence pte-miR-2b-5p

• Accession: MIMAT0046138
• Sequence: 1 - guugucaaaguggcugugacaug - 23
• Evidence: experimental; Illumina [1]

Mature sequence pte-miR-2b-3p

• Accession: MIMAT0046139
• Sequence: 42 - uaucacagccagcuuugaugagcg - 65
• Evidence: experimental; Illumina [1]

References

1. PMID:27324919 "Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum" Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP Genome Biol Evol. 8:2133-2144(2016).