miRBase entry: pte-mir-2b-2

Stem-loop pte-mir-2b-2


Accession
MI0038044
Description
Parasteatoda tepidariorum pte-mir-2b-2 precursor miRNA

Literature search
2 open access papers mention pte-mir-2b-2
(17 sentences)

Sequence

CUCACAAAGUGGGUGUGUAUAUGuuaguagaauuucaUAUCACAGCCAGCUUUGAUGAGCG
((((((((((((.((((.(((((..(......)..))))))))).))).))))).))))..

Structure
--    -     -   G    U     uu gu 
  CUCA CAAAG UGG UGUG AUAUG  a  a
  |||| ||||| ||| |||| |||||  |   
  GAGU GUUUC ACC ACAC UAUac  u  g
GC    A     G   G    -     uu aa 


Annotation confidence Not enough data
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Genome context
Scf5bK3_5995: 359128-359188 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from pte-mir-2b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-2b-3p

Accession MIMAT0046139
Description Parasteatoda tepidariorum pte-miR-2b-3p mature miRNA
Sequence 38 - UAUCACAGCCAGCUUUGAUGAGCG - 61
Evidence experimental
Illumina [1]

Mature pte-miR-2b-2-5p

Accession MIMAT0046140
Description Parasteatoda tepidariorum pte-miR-2b-2-5p mature miRNA
Sequence 1 - CUCACAAAGUGGGUGUGUAUAUG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144